The Division One League side will now face AshantiGold, who beat Asante Kotoko 3-1 in Accra, in the final.
Nzema Kotoko went down before the half-hour mark when Ali Muftawu put Unistar Academy on the board in the 26th minute.
But the celebrations were short-lived as Francis Atitsogbo drew them level three minutes later.
Then Nzema Kotoko were awarded a penalty just before the half-time whistle and it was converted by Agyenim Boateng.
If they beat AshantiGold in the final, Nzema Kotoko will represent Ghana in next season's CAF Confederation Cup. Read Full Story
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